PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID WALNUT_00021891-RA
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fagales; Juglandaceae; Juglans
Family bHLH
Protein Properties Length: 684aa    MW: 74848.3 Da    PI: 5.5699
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
WALNUT_00021891-RAgenomeJHUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH37.35e-12505550454
                         HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                 HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                         +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  WALNUT_00021891-RA 505 NHVEAERQRREKLNQRFYSLRAVVPNV-----SKMDKASLLGDAILYINEL 550
                         799***********************6.....5***************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142155.0E-5880261IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088816.736501550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17504571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.55E-14504555No hitNo description
Gene3DG3DSA:4.10.280.102.5E-17505571IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.1E-9505550IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.8E-16507556IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 684 aa     Download sequence    Send to blast
MHGMTDYRIT PPMNLWTSDE NPSVIESFMS SDLSFWPTPP PPPPQAQQLQ PQSSASTSAD  60
PTKALPQSQP SVALFNQETL QQRLQALIEG ARESWTYAIF WQSSYDYSGA SILGWGDGYY  120
KGDDDKSKGK AKTTSSAAEQ EHRKKVLREL NSLISDSAAS AADDSVDEEV TDTEWFFLVS  180
MTHSFVNGSG LAGQAFFNSS PVWVAGVDRL TDSPCERARQ GQVFGLQTIV CIPSANGVVE  240
LGSTELILHS SDLMNKVRVL FNFDSLEMGG SWPVTDQGEN DPSSLWINDP TPAAPMEIKD  300
SLNSTTVPSV PGTTNNGLQI SKAIQFENPS SSSLTENPSA IHMPSTNQSH QQRQQSQTQS  360
FFTRELNFSD YGYDGSSVVK NGNSNQLKPG SGEILNFGES KRSSYVSGHS QFVAPAVEEN  420
NKKKRTQSRG SNEEGMLSFT SGVILSNACV AKSSGGGGGG MADSEHSDLE ASVAKEVDSS  480
RVVDPEKRPR KRGRKPANGR EEPLNHVEAE RQRREKLNQR FYSLRAVVPN VSKMDKASLL  540
GDAILYINEL KGKLQSTESD KEDLQKQLEG LKKEFAGKDP RYPGSVPLPP LSDQDSKTSR  600
LIDLDIDVKI IGWDAMIRIQ SSKKNHPAAR LMAALKELDL DVHHASVSVV NDLMIQQATV  660
KMGSRFYTQE QLRLALSAKV GSSR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4yz6_A1e-74752644195Transcription factor MYC3
4rs9_A1e-74752644195Transcription factor MYC3
4rqw_B1e-74752644195Transcription factor MYC3
4rqw_A1e-74752644195Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1486494KRPRKRGRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002280253.10.0PREDICTED: transcription factor MYC2-like
SwissprotQ392040.0MYC2_ARATH; Transcription factor MYC2
TrEMBLF6HT900.0F6HT90_VITVI; Putative uncharacterized protein
STRINGVIT_02s0012g01320.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF29383364
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G32640.10.0bHLH family protein